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- Jung, H. and Meile, C. 2021. Pore scale numerical investigation of evolving porosity and permeability driven by biofilm growth. Transport in Porous Media 139: 203-221.
- Tansik, A., Hopkinson, B. and Meile, C. 2021. Inorganic carbon fluxes and perturbations by ocean acidification estimated using a data-constrained, process-based model of coral physiology. Marine Biology. accepted.
- Zindorf, M.*, Rooze, J.*, Meile, C., Maerz, C., Jouet, G., Newton, R., Brandily, C. and Pastor, L. 2021. The evolution of early diagenetic processes and signatures during the last glacial-interglacial climate transition at the Mozambique margin. Geochimica et Cosmochimica Acta 300: 79-94. doi.org/10.1016/j.gca.2021.02.024. *co-first authors
- He, X., Chadwick, G.L., Kempes, C., Orphan, V. and Meile, C. 2021. Controls on interspecies electron transport and size limitation of anaerobically methane oxidizing microbial consortia. mBIO. 12 (3), Art. No. e03620-20
- He, X., Chadwick, G., Otero, F.J., Orphan, V. and Meile, C. 2021. Spatially resolved electron transport through anode-respiring Geobacter sulfurreducens biofilms: controls and constraints. Chem Electro Chem. 8(10): 1747-1758. doi.org/10.1002/celc.202100111
- Jung, H. and Meile, C. 2020. Numerical investigation of microbial quorum sensing under various flow conditions. PeerJ 8:e9942 https://doi.org/10.7717/peerj.9942.
- Deng, L., Boelsterli, D., Kristensen, E., Meile, C., Shu, C-C., Bernasconi, S.M., Seidenkrantz, M-S., Glombitz, C., Lagostina, L., Han, X., Jorgensen, B.B., Roy, H. and Lever, M.A. 2020. Macrofaunal control of microbial community structure in continental margin sediments. PNAS, doi.org/10.1073/onas.1917494117
- Rooze, J., Peterson, L., Peterson, R.N. and Meile, C. 2020. Porewater flow patterns in surficial cold seep sediments inferred from conservative tracer profiles and early diagenetic modeling. Chemical Geology 536, doi.org/10.1016/j.chemgeo.2020.119468
- Meile, C. and Scheibe, T. 2019. Reactive transport modeling of microbial dynamics. Elements. 15, 111-116, doi: 10.2138/gselements.15.2.111
- Jung, H. and Meile, C. 2019. Upscaling of microbially driven first-order reactions in heterogeneous porous media. Journal of Contaminant Hydrology. doi.org/10.1016/j.jconhyd.2019.04.006
- Peterson, R.N., Meile, C. Peterson, L.E., Carter, M. and Miklesh, D. 2019. Groundwater discharge dynamics into a salt marsh tidal river. Estuarine, Coastal and Shelf Science 218, 324-333.
- He, X., Kempes, C., Chadwick, G., McGlynn, S. Shi, Y., Orphan, V. and Meile, C. 2018. Microbial interactions in the anaerobic oxidation of methane: Model simulations constrained by process rates and activity patterns. Environmental Microbiology; doi:10.1111/1462-2920.14507.
- Barcellos, D., O'Connell, C.S., Silver, W., Meile, C. and Thompson, A. 2018. Hot spots and hot moments of soil moisture explain fluctuations in iron and carbon cycling in a humid tropical forest soil. Soil Systems, 2(4), 59; doi.org/10.3390/soilsystems2040059.
- Miklesh, D. and Meile, C. 2018. Porewater salinity in a southeastern United States salt marsh: controls and interannual variation. PeerJ 6:e5911; doi.org/10.7717/peerj.5911.
- Chen, C., Meile, C., Wilmoth, J., Barcellos, D. and Thompson, A. 2018. Influence of pO2 on iron redox cycling and anaerobic organic carbon mineralization in a humid tropical forest soil. Environmental Science & Technology, doi:10.1021/acs.est.8b01368.
- Meile, C. and Scheibe, T.D. 2018. Reactive transport modeling and biogeochemical cycling. In: Reactive Transport Modeling (eds. Y. Xiao, F. Whitaker, T. Xu and C. Steefel). doi:10.1002/9781119060031.ch10
- Yuan, X., Cai, W.-J., Meile, C., Hopkinson, B.M., Ding, Q., Schoef, V., Warner, M.E., Hoadley, K.D., Chen, B., Liu, S., Huang, H., Ye, Y. and Grottoli, A.G. 2018. Quantitative interpretation of vertical profiles of calcium and pH in the coral coelentron. Marine Chemistry, doi:10.1016/j.marchem.2018.06.001.
- Ginn, B., Meile, C., Wilmoth, J., Tang, Y. and Thompson, A. 2017. Rapid iron reduction rates are stimulated by high-amplitude redox fluctuations in a tropical forest soil. Environmental Science & Technology 51, 3250-3259.
- Li, L., Maher, K., Navarre-Sitchler, A., Druhan, J., Meile, C., 20 others. 2016. Expanding the Role of Reactive Transport Models in Earth Surface Processes. Earth-Science Reviews. doi:10.1016/j.earscirev.2016.09.001
- Meile, C. and Jones, C. 2016. A mathematical perspective on microbial processes in Earth’s biogeochemical cycles. In: Ancon, F., Cannarasa, C., Jones, C. and Portaluri, A. (eds.): “Mathematical paradigms of climate science”. Springer.
- Rooze, J. and Meile, C. 2016. The effect of redox conditions and bioirrigation on nitrogen isotope fractionation in marine sediments. Geochimica et Cosmochimica Acta. doi:10.1016/j.gca.2016.04.040
- Dornhoffer, T., Waldbusser, G.G. and Meile, C. 2015. A modeling study of lugworm irrigation behavior effects on sediment nitrogen cycling. Marine Ecology Progress Series, 534, 121-134. doi:10.3354/meps11381
- Lowell, R.P., Houghton, J., Farough, A., Craft, K., Larson, B., Meile, C. 2015. Mathematical modeling of diffuse flow in seafloor hydrothermal systems: The potential extent of the subsurface biosphere at mid-ocean ridges. Earth and Planetary Science Letters 425, 145-153.
- Larson, B.I., Houghton, J.L., Lowell, R.P., Farough, A., and Meile, C. 2015. Subsurface conditions in hydrothermal vents inferred from diffuse flow composition, and models of reaction and transport. Earth and Planetary Science Letters 424, 245-255.
- Hoelker, F., Vanni, M.J., Kuiper, J.J., Meile, C., Grossart, H.-P., Stief, P., Adrian, R., Lorke, A., Dellwig, O., Brand, A., Hupfer, M., Mooij, W.M., Nuetzmann, G. and Lewandowski, J. 2015. Tube-dwelling invertebrates: tiny ecosystem engineers have large effects in lake ecosystems. Ecology Monographs 85, 333-351.
- Lai, M.J. and Meile, C. 2015. Scattered data interpolation with nonnegative preservation using bivariate splines and its application. Computer Aided Geometry Design 34, 37-48.
- Tishchenko, V., Meile, C., Scherer, M., Pasakarnis, T. and Thompson, A. 2015. Fe2+ catalyzed iron atom exchange and re-crystallization in a tropical soil. Geochimica et Cosmochimica Acta 148, 191-202. doi:10.1016/j.gca.2014.09.018
- Loftis, K. and Meile, C. 2014. Isotopes and elemental ratios in multi-parameter mixing models. Limnology and Oceanography Methods 12, 694-702.
- Crespo-Medina, M., Meile, C., Hunter, K.S., Diercks, A.-R., Asper, V.L., Orphan, V.J., Tavormina, R., Nigro, L, Battles, J., Chanton, J.P., Shiller, A.M., Joung, D.-J., Amon, R.M.W., Bracco, A., Montoya, J.P., Villareal, T.A., Wood, A.M., and Joye, S.B. 2014. The rise and fall of methanotrophy following a deepwater oil-well blowout. Nature Geoscience 7, 423-427. doi:10.1038/ngeo2156
- Ginn, B., Habteselassie, M.Y., Meile, C. and Thompson, A. 2014. Effects of sample storage on microbial Fe-reduction in tropical rainforest soils. Soil Biology and Biochemistry 68, 44-51. doi:10.1016/j.soilbio.2013.09.012
- Schutte, C.A., Hunter, K., McKay, P., Di Iorio, D., Joye, S. and Meile, C. 2013. Patterns and controls of nutrient concentrations in a southeastern United States tidal creek. Oceanography 26(3), 132-139. doi:10.5670/oceanog.2013.55
- Hopkinson, B.M., Meile, C., and Shen C. 2013. Quantification of extracellular carbonic anhydrase activity in two marine diatoms and investigation of its role. Plant Physiology 162(2), 1142-1152. doi:10.1104/pp.113.217737
- Volkenborn, N., Meile, C., Polerecky, L., Pilditch, C., Norkko, A., Norkko, J., Hewitt, J.E., Thrush, S.F., Wethey, D.S. and Woodin, S.A. 2013. Intermittent bioirrigation and oxygen dynamics in permeable sediments: An experimental and modeling study of three tellinid bivalves. Journal of Marine Research 70(6), 794-823. doi:10.1357/002224012806770955
- Segarra, K.E.A., Samarkin, V., King, E., Meile, C. and Joye, S.B. 2013. Seasonal variations of methane fluxes from a tidal, freshwater wetland (Hammersmith Creek, GA). Biogeochemistry 115, 349-361. doi:10.1007/s10533-013-9840-6
- Paloma, L., Meile, C. and Joye, S.B. 2012. Drought impacts on biogeochemistry and microbial processes in salt marsh sediments: a flow-through reactor approach. Biogeochemistry 112, 389-407. doi:10.1007/s10533-012-9734-z
- Chan, L.-K., Newton, R.J., Sharma, S., Smith, C.B., Rayapati, P., Limardo, A.J., Meile, C. and Moran, M.A. 2012. Transcriptional changes underlying elemental stoichiometry shifts in a marine heterotrophic bacterium. Frontiers in Aquatic Microbiology Volume 3, Article 159, doi:10.3389/fmicb.2012.00159
- Dornhoffer, T., Waldbusser, G.G. and Meile, C. 2012. Burrow patchiness and oxygen fluxes in bioirrigated sediments. Journal of Experimental Marine Biology and Ecology 412: 81-86.
- Pennings, S., Alber, M., Alexander, C., Booth, M., Burd, A., Cai, W., Craft, C., DePratter, C., DiIorio, D., Hollibaugh, J., Hopkinson, C., Joye, S., Meile, C., Moore, B., Silliman, B., Thompson, V., Wares, J.P. 2011. South Atlantic tidal wetlands. In Batzer, D.P. and Baldwin, A.H. (eds.) Wetland Habitats of North America. Ecology and Conservation Concerns. University of California Press. 448p.
- Joye et al. 2011. Comment on “A Persistent Oxygen Anomaly Reveals the Fate of Spilled Methane in the Deep Gulf of Mexico”. Science 332(6033):1033, doi:10.1126/science.1203307
- Porubsky, W., Joye, S., Moore, W.S., Tuncay, K., Meile, C. 2010. Field measurements and modeling of groundwater flow and biogeochemistry at Moses Hammock, a backbarrier island on the Georgia coast. Biogeochemistry104, 69-90. doi:10.1007/s10533-010-9484-8
- Tilburg, C.E., Seay, J., Bishop, T.D., Miller III, H.L. and Meile, C. 2010. Distribution and retention of Petrolisthes armatus in a coastal plain estuary: the role of vertical movement in larval transport. Estuarine, Coastal and Shelf Science 88, 260-266.
- Jourabchi, P., L’Heureux, I., Meile, C. and Van Cappellen, P. 2010. Physical and chemical steady-state compaction in deep-sea sediments: role of mineral reactions. Geochimica et Cosmochimica Acta 74, 3493-3513.
- King, E.L., Tuncay, K., Ortoleva, P. and Meile, C. 2010. Modeling biogeochemical dynamics in porous media: practical considerations of pore scale variability, reaction networks, and microbial population dynamics in a sandy aquifer. Journal of Contaminant Hydrology 112, 130-140.
- Newton, R., Griffin, L., Bowles, K., Meile, C., Gifford, S., Givens, C., Howard, E., King, E., Oakley, C., Reisch, C., Rinta-Kanto, J., Sharma, S., Sun, S., Varaljay, V., Vila-Costa, M., Westrich, J. and Moran, M.A. 2010. Genome characteristics of a generalist marine bacterial lineage. ISME Journal, doi:10.1038/ismej.2009.150
- Pallud, C., Kausch, M., Fendorf, S. and Meile, C. 2010. Spatial patterns and modeling of reductive ferrihydrite transformation observed in artifical soil aggregates. Environmental Science and Technology 44, 74-79.
- Joye, S.B., Samarkin, V.A., Orcutt, B.N., MacDonald, I., Hinrichs, K.-U., Elvert, M., Teske, A., Lloyd, K., Montoya, J.P. and Meile, C. 2009. Metabolic variability in seafloor brines revealed by carbon and sulphur dynamics. Nature Geoscience, doi:10.1038/NGEO475.
- Meile, C., Porubsky, W.P., Walker, R.L., Payne, K. 2009. Natural attenuation of nitrogen loading from septic effluents: Spatial and environmental controls. Water Research 44(5), 1399-1408.
- King, E.L., Tuncay, K., Ortoleva, P. and Meile, C. 2009. In silico Geobacter sulfurreducens metabolism and its representation in reactive transport models. Applied and Environmental Microbiology 75(1), 29-38.
- Orcutt, B. and Meile, C. 2008. Constraints on mechanisms and rates of anaerobic oxidation of methane by microbial consortia: Process-based modeling of ANME-2 archaea and sulfate reducing bacteria interactions. Biogeosciences 5, 1587-1599.
- Spiteri, C., Slomp, C., Charette, M.A., Tuncay, K. and Meile, C. 2008. Flow and nutrient dynamics in a subterranean estuary (Waquoit Bay, MA, USA): field data and reactive transport modeling. Geochimica et Cosmochimica Acta 72, 3398-3412.
- Donahue, M.A., Werne, J.P., Meile, C. and Lyons, T.W. 2008. Modeling sulfur isotope fractionation and differential diffusion during sulfate reduction in sediments of the Cariaco Basin. Geochimica et Cosmochimica Acta 72, 2287-2297.
- Jourabchi, P., Meile, C., Pasion L.R. and Van Cappellen P. 2008. Quantitative interpretation of pore water O2 and pH distributions in deep-sea sediments. Geochimica et Cosmochimica Acta 72: 1350-1364.
- Spiteri, C., Van Cappellen, P., Regnier, P., Meile, C. and Slomp, C. 2008. Phosphate mobilization in coastal aquifers due to seawater intrusion: A model assessment. In Hill, M.C. (ed.) Groundwater Quality 2007 - Securing Groundwater Quality in Urban and Industrial Environments. International Association of Hydrological Science IAHS Redbook. IAHS Publ. 324.
- Spiteri, C., Slomp, C.P., Tuncay, K. and Meile, C. 2007. Modeling biogeochemical processes in subterranean estuaries: The effect of flow dynamics and redox conditions on submarine groundwater discharge of nutrients. Water Resources Research 44, W02430. doi:10.1029/2007WR006071.
- Moran M.A. et al. 2007. Ecological Genomics of Marine Roseobacters. Applied and Environmental Microbiology 73, 4559-4569.
- Miller, H.L. III, Meile, C. and Burd, A.B. 2007. Process model of oxygen and hydrogen sulfide dynamics in Thalassia testudinum. Ecological Modeling 205, 365-380. doi:10.1016/j.ecolmodel.2007.03.004
- Nehrke, G., Reichart, G.J., Van Cappellen, P., Meile, C. and Bijma, J. 2007. Dependence of calcite growth rate and Sr partitioning on solution stoichiometry: Non-Kossel crystal growth. Geochimica et Cosmochimica Acta 71(9), 2240-2249. doi:10.1016/j.gca.2007.02.002
- Spiteri, C., Slomp, C.P., Regnier, P., Meile, C. and Van Cappellen, P. 2007. Modelling the geochemical fate and transport of wastewater-derived phosphorus in contrasting groundwater systems. Journal of Contaminant Hydrology. doi:10.1016/j.jconhyd.2007.01.002
- Pallud, C., Meile, C., Laverman, A.M., Abell, J. and Van Cappellen, P. 2007. The use of flow-through sediment reactors in biogeochemical kinetics: Methodology and examples of applications. Marine Chemistry. doi:10.1016/j.marchem.2006.12.011
- Laverman, A.M, Meile, C., Van Cappellen, P. and Wieringa, E.B.A. 2007. Vertical distribution of denitrification in an estuarine sediment: Integrating sediment flowthrough reactor experiments and microprofiling via reactive transport modeling. Applied and Environmental Microbiology 73, 40-47.
- Meile, C., and Tuncay, K. 2006. Scale dependence of reaction rates in porous media. Advances in Water Resources 29, 62-71, doi:10.1016/j.advwatres.2005.05.007.
- Meile, C. and Van Cappellen, P. 2005. Particle age distribution and O2 exposure time: Time scales in bioturbated sediments. Global Biogeochemical Cycles 19: GB3013, doi:10.1029/2004GB002371.
- Meile, C., Berg, P., Van Cappellen, P. and Tuncay, K. 2005. Solute-specific pore water irrigation: Implications for chemical cycling in early diagenesis. Journal of Marine Research 63(3), 601-621.
- Koretsky, C., Meile, C. and Van Cappellen, P. 2005. Incorporating Ecological and Biogeochemical Information into Irrigation Models. In: E. Kristensen, J. Kostka and R.R. Haese (eds): Interactions between macro- and microorganisms in aquatic sediments.
- Hollibaugh, J.T., Carini, S., Gürleyük, H., Jellison, R., Joye, S.B., LeCleir, G., Meile, C., Vasquez, L. and Wallschläger, D. 2005. Distribution of Arsenic Species in an Alkaline, Hypersaline, Meromictic Lake and Response to Seasonal Stratification and Anoxia. Geochimica et Cosmochimica Acta 69(8), 1925-1937.
- Peretyazhko, T., Van Cappellen, P., Meile, C., Coquery, M., Musso, M., Regnier, P. and Charlet, L. 2005. Biogeochemistry of major redox elements and mercury in a tropical reservoir lake (Petit Saut, French Guiana). Aquatic Geochemistry 11, 33-55.
- Haese, R.R., Meile, C., Van Cappellen, P., and De Lange, G.J. 2003. Carbon geochemistry of cold seeps: Methane fluxes and transformation in sediments from Kazan mud volcano, eastern Mediterranean Sea. Earth and Planetary Science Letters 212(3-4), 361-375.
- Meile, C., Tuncay, K., and Van Cappellen, P. 2003 Explicit representation of spatial heterogeneity in reactive transport models: Application to bioirrigated sediments. Journal of Geochemical Exploration 78-79, 231-234.
- Koretsky, C., Moore, C., Lowe, K.L., Meile, C., DiChristina, T.J. and Van Cappellen, P. 2003. Seasonal oscillations of microbial respiratory pathways in saltmarsh sediments (Sapelo Island, GA, USA). Biogeochemistry 64, 179-203.
- Meile, C. and Van Cappellen, P. 2003. Global estimates of enhanced solute transport in marine sediments. Limnology and Oceanography 48(2), 777-786.
- Koretsky, C., Meile, C. and Van Cappellen, P. 2002. Quantification of bioirrigation using ecological data: A stochastic approach. Geochemical Transactions 3, 17-30.
- Meile, C., Koretsky, C. and Van Cappellen P. 2001. Quantifying bioirrigation in aquatic sediments - An inverse approach. Limnology and Oceanography 46(1), 164-177.